Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1014797	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1014798	1.00[CEU][hapmap]
rs10225728	1.00[CEU][hapmap]
rs10226562	0.88[GIH][hapmap]
rs10268461	0.88[GIH][hapmap]
rs10485922	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[EUR][1000 genomes]
rs10485927	0.88[GIH][hapmap]
rs1207807	1.00[ASN][1000 genomes]
rs1642887	1.00[CEU][hapmap]
rs17151887	0.88[GIH][hapmap]
rs17406392	0.80[CEU][hapmap]
rs17471316	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs1799001	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs1799002	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363924	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs2363929	1.00[CEU][hapmap]
rs41435246	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs477641	1.00[ASN][1000 genomes]
rs480203	1.00[ASN][1000 genomes]
rs518676	1.00[ASN][1000 genomes]
rs537574	1.00[ASN][1000 genomes]
rs561356	1.00[ASN][1000 genomes]
rs6970122	1.00[CEU][hapmap]
rs6979739	1.00[CEU][hapmap]
rs73135572	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: