Variant report
| Variant | rs6979739 |
|---|---|
| Chromosome Location | chr7:78607537-78607538 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1014797 | 1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs1014798 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs10225728 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs10226562 | 1.00[TSI][hapmap] |
| rs10228655 | 1.00[TSI][hapmap] |
| rs10268461 | 1.00[TSI][hapmap] |
| rs10485922 | 1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs10485927 | 1.00[TSI][hapmap] |
| rs1207807 | 1.00[ASN][1000 genomes] |
| rs1642887 | 1.00[CEU][hapmap] |
| rs17151887 | 1.00[TSI][hapmap] |
| rs17406392 | 0.80[CEU][hapmap] |
| rs17471316 | 1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs1799001 | 1.00[CEU][hapmap] |
| rs1799002 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2363924 | 1.00[CEU][hapmap] |
| rs2363929 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs41435246 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs477641 | 1.00[ASN][1000 genomes] |
| rs480203 | 1.00[ASN][1000 genomes] |
| rs518676 | 1.00[ASN][1000 genomes] |
| rs537574 | 1.00[ASN][1000 genomes] |
| rs561356 | 1.00[ASN][1000 genomes] |
| rs6466443 | 1.00[CEU][hapmap] |
| rs6970122 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv482826 | chr7:78548319-78717605 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv471642 | chr7:78548320-78717605 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
