Variant report

Variant	rs7801721
Chromosome Location	chr7:78548094-78548095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10085753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10230752	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10485921	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11983680	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs11983739	0.84[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap]
rs1642887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs17151686	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17151714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17151746	0.92[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap]
rs17151751	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs17151808	0.85[JPT][hapmap];0.94[MEX][hapmap]
rs2193713	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216458	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[ASN][1000 genomes]
rs2363924	1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs6948798	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs719413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72612606	0.85[ASN][1000 genomes]
rs72612607	0.91[ASN][1000 genomes]
rs7782075	1.00[YRI][hapmap]
rs9656198	0.86[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap]
rs993515	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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