The 2.0 version of rSNPBase

Variant report

Variant rs72619921
Chromosome Location chr3:24187890-24187891
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:24167000-24197800 Weak transcription K562 blood
2 chr3:24173600-24188200 Weak transcription Primary hematopoietic stem cells blood
3 chr3:24180000-24206600 Weak transcription Pancreas Pancrea
4 chr3:24182000-24188000 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr3:24182000-24194400 Weak transcription Fetal Kidney kidney
6 chr3:24183400-24198000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr3:24184600-24196200 Weak transcription HepG2 liver
8 chr3:24185000-24193200 Weak transcription Fetal Lung lung
9 chr3:24185400-24188000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr3:24185400-24193200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr3:24185400-24195200 Weak transcription Brain Anterior Caudate brain
12 chr3:24186200-24188600 Enhancers Placenta Placenta
13 chr3:24186200-24230800 Weak transcription Fetal Intestine Large intestine
14 chr3:24186400-24188600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr3:24186600-24188200 Enhancers Aorta Aorta
16 chr3:24186600-24188600 Enhancers NH-A brain
17 chr3:24186600-24189200 Enhancers Skeletal Muscle Male skeletal muscle
18 chr3:24186800-24188200 Enhancers NHEK skin
19 chr3:24186800-24188400 Enhancers Colon Smooth Muscle Colon
20 chr3:24186800-24188400 Enhancers Fetal Heart heart
21 chr3:24186800-24188600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr3:24186800-24188600 Enhancers HMEC breast
23 chr3:24187000-24188000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr3:24187000-24188200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr3:24187000-24188200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr3:24187000-24188200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr3:24187000-24188200 Enhancers Right Ventricle heart
28 chr3:24187400-24188000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr3:24187400-24188000 Enhancers Fetal Muscle Leg muscle
30 chr3:24187400-24188000 Flanking Active TSS A549 lung
31 chr3:24187400-24188000 Flanking Active TSS Hela-S3 cervix
32 chr3:24187400-24188200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr3:24187400-24188200 Flanking Active TSS Muscle Satellite Cultured Cells --
34 chr3:24187400-24188200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
35 chr3:24187400-24188200 Strong transcription Liver Liver
36 chr3:24187400-24188200 Enhancers Psoas Muscle Psoas
37 chr3:24187400-24188200 Enhancers Rectal Smooth Muscle rectum
38 chr3:24187400-24188200 Enhancers Stomach Mucosa stomach
39 chr3:24187400-24188200 Flanking Active TSS NHDF-Ad bronchial
40 chr3:24187400-24188400 Enhancers Fetal Brain Male brain
41 chr3:24187400-24188400 Strong transcription Fetal Intestine Small intestine
42 chr3:24187600-24188200 Genic enhancers Breast Myoepithelial Primary Cells Breast
43 chr3:24187600-24188200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr3:24187600-24188200 Enhancers Adipose Nuclei Adipose
45 chr3:24187600-24188200 Enhancers Left Ventricle heart
46 chr3:24187600-24188200 Enhancers Ovary ovary
47 chr3:24187600-24188200 Flanking Active TSS HSMM muscle
48 chr3:24187600-24190800 Enhancers Placenta Amnion Placenta Amnion
49 chr3:24187800-24188000 Enhancers Brain Inferior Temporal Lobe brain
50 chr3:24187800-24188000 Enhancers Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015