Variant report

Variant	rs72628134
Chromosome Location	chr3:24100870-24100871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs72619917	0.85[ASN][1000 genomes]
rs72619918	0.85[ASN][1000 genomes]
rs72619921	0.80[ASN][1000 genomes]
rs72627054	0.85[ASN][1000 genomes]
rs72628110	0.85[ASN][1000 genomes]
rs72628118	0.85[ASN][1000 genomes]
rs72628120	0.85[ASN][1000 genomes]
rs72628128	1.00[ASN][1000 genomes]
rs72628131	1.00[ASN][1000 genomes]
rs72628139	1.00[ASN][1000 genomes]
rs72628145	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24090800-24101400	Weak transcription	NHLF	lung
2	chr3:24100200-24102200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:24100400-24102000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:24100600-24101400	Enhancers	Aorta	Aorta
5	chr3:24100600-24101400	Enhancers	NHEK	skin
6	chr3:24100600-24102000	Enhancers	Stomach Smooth Muscle	stomach
7	chr3:24100800-24101000	Enhancers	Right Ventricle	heart
8	chr3:24100800-24101400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:24100800-24101400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:24100800-24101400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:24100800-24101800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:24100800-24102000	Enhancers	Rectal Smooth Muscle	rectum
13	chr3:24100800-24102200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:24100800-24102200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:24100800-24102200	Enhancers	HMEC	breast
16	chr3:24100800-24102400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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