Variant report

Variant	rs72628110
Chromosome Location	chr3:24020204-24020205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:23958447..23960290-chr3:24018623..24020372,3	K562	blood:
2	chr3:23986927..23990599-chr3:24017347..24022054,5	MCF-7	breast:
3	chr3:24005922..24007650-chr3:24019450..24021733,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction
ENSG00000174738	Chromatin interaction
ENSG00000197885	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs72627054	0.90[ASN][1000 genomes]
rs72628118	1.00[ASN][1000 genomes]
rs72628120	1.00[ASN][1000 genomes]
rs72628128	0.85[ASN][1000 genomes]
rs72628131	0.85[ASN][1000 genomes]
rs72628134	0.85[ASN][1000 genomes]
rs72628139	0.85[ASN][1000 genomes]
rs72628145	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23989200-24020600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:23989200-24033200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:23994000-24022800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:23996200-24021200	Weak transcription	Small Intestine	intestine
5	chr3:24000000-24020400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:24000800-24021800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:24004000-24022600	Weak transcription	Aorta	Aorta
8	chr3:24004000-24022600	Weak transcription	Pancreas	Pancrea
9	chr3:24004000-24023400	Weak transcription	Gastric	stomach
10	chr3:24004000-24023800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:24004200-24022600	Weak transcription	Right Ventricle	heart
12	chr3:24005200-24022600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:24005600-24032800	Weak transcription	NH-A	brain
14	chr3:24005800-24021400	Strong transcription	Placenta	Placenta
15	chr3:24007800-24023200	Weak transcription	Colonic Mucosa	Colon
16	chr3:24009800-24022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:24010200-24022400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:24010200-24023800	Weak transcription	Psoas Muscle	Psoas
19	chr3:24010200-24028800	Weak transcription	HUVEC	blood vessel
20	chr3:24010400-24024000	Weak transcription	Brain Angular Gyrus	brain
21	chr3:24010600-24020600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:24011600-24022400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:24011800-24020800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:24013200-24022600	Weak transcription	Fetal Stomach	stomach
25	chr3:24013800-24022400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr3:24014600-24022600	Weak transcription	Fetal Thymus	thymus
27	chr3:24016800-24020600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:24017000-24020800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:24017600-24020400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:24017600-24022000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:24017800-24020800	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:24018200-24020600	Strong transcription	Liver	Liver
33	chr3:24018200-24020800	Weak transcription	Thymus	Thymus
34	chr3:24018200-24021000	Weak transcription	Brain Germinal Matrix	brain
35	chr3:24018200-24022400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:24018200-24022400	Strong transcription	Adipose Nuclei	Adipose
37	chr3:24018200-24022400	Weak transcription	NHEK	skin
38	chr3:24018200-24022600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:24018200-24022600	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:24018200-24022600	Weak transcription	Esophagus	oesophagus
41	chr3:24018200-24022600	Weak transcription	Spleen	Spleen
42	chr3:24018200-24022600	Weak transcription	HMEC	breast
43	chr3:24018200-24022800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr3:24018200-24022800	Weak transcription	Dnd41	blood
45	chr3:24018200-24023600	Weak transcription	Lung	lung
46	chr3:24018200-24024000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:24018200-24024400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr3:24018200-24024600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr3:24018200-24033200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:24018400-24020400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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