Variant report

Variant	rs72619923
Chromosome Location	chr3:24234001-24234002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24232065..24234894-chr3:24391713..24393801,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17014331	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72619922	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72619924	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72619925	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72619926	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9820526	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24223200-24234400	Weak transcription	HepG2	liver
2	chr3:24227400-24238800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:24227800-24234200	Weak transcription	Brain Germinal Matrix	brain
4	chr3:24227800-24239200	Weak transcription	Pancreas	Pancrea
5	chr3:24227800-24254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:24231800-24238200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:24232000-24234600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:24232200-24234400	Weak transcription	Fetal Intestine Large	intestine
9	chr3:24232400-24234200	Weak transcription	Aorta	Aorta
10	chr3:24232400-24234400	Weak transcription	Fetal Intestine Small	intestine
11	chr3:24232400-24239200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:24233000-24234200	Enhancers	Brain Hippocampus Middle	brain
13	chr3:24233200-24234200	Enhancers	Colon Smooth Muscle	Colon
14	chr3:24233200-24234400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr3:24233400-24234200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:24233400-24234200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:24233400-24234400	Enhancers	Adipose Nuclei	Adipose
18	chr3:24233400-24234400	Enhancers	Brain Cingulate Gyrus	brain
19	chr3:24233400-24234600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:24233400-24234600	Enhancers	Brain Angular Gyrus	brain
21	chr3:24233400-24234600	Enhancers	NHDF-Ad	bronchial
22	chr3:24233600-24234200	Enhancers	HSMMtube	muscle
23	chr3:24233600-24234400	Enhancers	Left Ventricle	heart
24	chr3:24233600-24234400	Enhancers	Rectal Smooth Muscle	rectum
25	chr3:24233800-24235600	Enhancers	Psoas Muscle	Psoas
26	chr3:24234000-24234200	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr3:24234000-24234400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links