Variant report

Variant	rs9820526
Chromosome Location	chr3:24240974-24240975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13320773	0.86[AMR][1000 genomes]
rs13327743	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17014331	0.92[EUR][1000 genomes]
rs72619923	0.82[EUR][1000 genomes]
rs72619924	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24227800-24254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24234600-24245600	Weak transcription	Fetal Intestine Small	intestine
3	chr3:24237600-24244400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:24238400-24241000	Weak transcription	HSMMtube	muscle
5	chr3:24238400-24254000	Weak transcription	Aorta	Aorta
6	chr3:24238600-24244600	Enhancers	NHDF-Ad	bronchial
7	chr3:24238800-24241200	Weak transcription	NHLF	lung
8	chr3:24239000-24268200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:24239400-24245000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:24240000-24245000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:24240200-24241000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:24240200-24241200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:24240200-24242200	Enhancers	Hela-S3	cervix
14	chr3:24240400-24241200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:24240600-24241000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:24240600-24241400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:24240600-24242000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:24240800-24241200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr3:24240800-24241400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr3:24240800-24242600	Weak transcription	Psoas Muscle	Psoas
21	chr3:24240800-24242800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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