The 2.0 version of rSNPBase

Variant report

Variant rs72622328
Chromosome Location chr3:112328429-112328430
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:112282000-112330400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr3:112282000-112330600 Weak transcription Esophagus oesophagus
3 chr3:112282400-112340000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr3:112298800-112335200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr3:112300200-112331000 Weak transcription Lung lung
6 chr3:112300200-112334000 Weak transcription Fetal Stomach stomach
7 chr3:112305400-112330400 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr3:112305800-112334800 Weak transcription Aorta Aorta
9 chr3:112307400-112329000 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr3:112311600-112330600 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr3:112311600-112331000 Weak transcription Psoas Muscle Psoas
12 chr3:112312400-112331000 Weak transcription HUES64 Cell Line embryonic stem cell
13 chr3:112312600-112330400 Weak transcription Fetal Adrenal Gland Adrenal Gland
14 chr3:112312600-112346200 Weak transcription Rectal Smooth Muscle rectum
15 chr3:112312600-112347200 Weak transcription Fetal Intestine Large intestine
16 chr3:112316200-112342800 Weak transcription Fetal Muscle Trunk muscle
17 chr3:112316400-112333600 Weak transcription A549 lung
18 chr3:112316600-112337600 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr3:112317600-112328600 Weak transcription Stomach Smooth Muscle stomach
20 chr3:112318000-112341800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr3:112318200-112330600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr3:112322200-112337200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr3:112322800-112329400 Strong transcription Colon Smooth Muscle Colon
24 chr3:112323400-112332400 Strong transcription Placenta Amnion Placenta Amnion
25 chr3:112323800-112334600 Weak transcription Fetal Muscle Leg muscle
26 chr3:112324400-112331200 Strong transcription Adipose Nuclei Adipose
27 chr3:112324600-112331800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr3:112324800-112328600 Strong transcription NHDF-Ad bronchial
29 chr3:112324800-112329000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr3:112324800-112330600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr3:112325000-112328600 Strong transcription Muscle Satellite Cultured Cells --
32 chr3:112325000-112329400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
33 chr3:112325200-112328600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr3:112325200-112329800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr3:112325400-112328600 Strong transcription HSMM muscle
36 chr3:112325400-112329400 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr3:112325600-112328800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr3:112325600-112330400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr3:112326000-112333400 Weak transcription Ovary ovary
40 chr3:112326200-112329200 Weak transcription HSMMtube muscle
41 chr3:112326200-112330000 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr3:112326800-112328600 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr3:112327200-112330600 Weak transcription Fetal Heart heart
44 chr3:112327200-112331200 Weak transcription HUVEC blood vessel
45 chr3:112327200-112331600 Weak transcription Fetal Lung lung
46 chr3:112327400-112328800 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr3:112327400-112329000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr3:112327600-112328600 Weak transcription NH-A brain
49 chr3:112327600-112328800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr3:112327600-112329000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015