Variant report

Variant	rs72622478
Chromosome Location	chr14:56521863-56521864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17090785	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56515200-56525400	Weak transcription	Fetal Intestine Large	intestine
2	chr14:56517800-56522000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:56521600-56522200	Enhancers	Fetal Lung	lung
4	chr14:56521600-56524400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:56521800-56522200	Flanking Active TSS	Fetal Brain Female	brain
6	chr14:56521800-56522400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:56521800-56522400	Active TSS	Brain Angular Gyrus	brain
8	chr14:56521800-56522400	Active TSS	Brain Cingulate Gyrus	brain
9	chr14:56521800-56522400	Active TSS	Brain Hippocampus Middle	brain
10	chr14:56521800-56522400	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr14:56521800-56522400	Active TSS	Brain Substantia Nigra	brain
12	chr14:56521800-56522600	Active TSS	Brain Anterior Caudate	brain
13	chr14:56521800-56523200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links