Variant report

Variant	rs72625791
Chromosome Location	chr15:74682873-74682874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74682423..74685354-chr15:74723880..74726418,2	K562	blood:
2	chr15:74678499..74686804-chr15:74724020..74729713,13	MCF-7	breast:
3	chr15:74677010..74680844-chr15:74682783..74686822,5	K562	blood:
4	chr15:74680370..74682894-chr15:74906688..74908814,2	K562	blood:
5	chr15:74681425..74683559-chr15:74694523..74696084,2	K562	blood:
6	chr15:74681754..74686818-chr15:74686850..74691835,9	K562	blood:
7	chr15:74673950..74692681-chr15:74720825..74732493,46	MCF-7	breast:
8	chr15:74682079..74683871-chr15:74715405..74717396,2	MCF-7	breast:
9	chr15:74681969..74683512-chr15:74696036..74698830,3	K562	blood:
10	chr15:74681634..74683462-chr15:74693341..74694867,2	MCF-7	breast:
11	chr15:74682172..74683884-chr15:74728486..74730542,2	K562	blood:
12	chr15:74682334..74683937-chr15:74722563..74724143,2	K562	blood:
13	chr15:74681656..74683846-chr15:74699710..74701534,2	K562	blood:
14	chr15:74681432..74683884-chr15:74728087..74731216,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260919	Chromatin interaction
ENSG00000138623	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11072481	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4505257	0.81[AFR][1000 genomes]
rs56189903	0.80[AFR][1000 genomes]
rs58844886	0.81[AFR][1000 genomes]
rs74023500	0.80[AFR][1000 genomes]
rs9944175	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74667400-74691200	Enhancers	Placenta	Placenta
2	chr15:74672600-74685600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:74673000-74685000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:74673000-74685600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr15:74674400-74683000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:74674600-74686200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:74675800-74695800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:74676200-74685800	Enhancers	Primary hematopoietic stem cells	blood
9	chr15:74676400-74683000	Enhancers	Fetal Lung	lung
10	chr15:74677600-74689000	Weak transcription	Primary T cells from cord blood	blood
11	chr15:74678000-74683400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:74678200-74683200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:74678600-74683200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr15:74678800-74684000	Weak transcription	NHDF-Ad	bronchial
15	chr15:74679200-74684600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:74679200-74684600	Weak transcription	Brain Anterior Caudate	brain
17	chr15:74679400-74683600	Weak transcription	Brain Substantia Nigra	brain
18	chr15:74679400-74684400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:74679600-74683200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:74679600-74684000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:74679600-74684200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:74679600-74684400	Weak transcription	NH-A	brain
23	chr15:74679600-74684600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:74679800-74683200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:74679800-74683600	Weak transcription	Brain Angular Gyrus	brain
26	chr15:74679800-74683800	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:74679800-74684000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:74679800-74684200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr15:74679800-74686400	Weak transcription	Dnd41	blood
30	chr15:74680200-74683000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:74680600-74691800	Enhancers	Fetal Thymus	thymus
32	chr15:74680800-74685000	Enhancers	Thymus	Thymus
33	chr15:74681000-74683400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:74681200-74683800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:74681200-74684000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:74681400-74683000	Weak transcription	Lung	lung
37	chr15:74681400-74687400	Weak transcription	HMEC	breast
38	chr15:74681600-74695600	Enhancers	Primary B cells from peripheral blood	blood
39	chr15:74681800-74683000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:74681800-74683400	Flanking Active TSS	K562	blood
41	chr15:74681800-74684000	Weak transcription	HSMMtube	muscle
42	chr15:74681800-74686000	Enhancers	Spleen	Spleen
43	chr15:74681800-74688800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:74682000-74683000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr15:74682000-74683800	Weak transcription	HSMM	muscle
46	chr15:74682000-74687400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:74682000-74688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:74682200-74685400	Enhancers	Primary B cells from cord blood	blood
49	chr15:74682400-74683000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:74682400-74683000	Bivalent Enhancer	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links