Variant report

Variant	rs9944175
Chromosome Location	chr15:74679948-74679949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74678499..74686804-chr15:74724020..74729713,13	MCF-7	breast:
2	chr15:74677010..74680844-chr15:74682783..74686822,5	K562	blood:
3	chr15:74675588..74678002-chr15:74678167..74680672,2	K562	blood:
4	chr15:74673950..74692681-chr15:74720825..74732493,46	MCF-7	breast:
5	chr15:74667595..74674345-chr15:74676249..74682092,7	K562	blood:
6	chr15:74678696..74681128-chr15:74729698..74732271,2	K562	blood:
7	chr15:74676558..74680778-chr15:74721674..74728366,9	K562	blood:
8	chr15:74678579..74680979-chr15:74717975..74720152,2	MCF-7	breast:
9	chr15:74679411..74681539-chr15:74718072..74720189,2	K562	blood:
10	chr15:74675197..74678908-chr15:74679707..74682707,4	K562	blood:
11	chr15:74677461..74681147-chr15:74724592..74728667,7	K562	blood:
12	chr15:74678588..74680706-chr15:74692367..74693995,2	K562	blood:
13	chr15:74679641..74681400-chr15:74742681..74745074,2	K562	blood:
14	chr15:74674023..74678158-chr15:74678990..74681883,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction
ENSG00000138629	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4555110	0.80[AMR][1000 genomes]
rs7167038	0.80[AMR][1000 genomes]
rs7181947	0.85[AMR][1000 genomes]
rs72625791	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74667400-74691200	Enhancers	Placenta	Placenta
2	chr15:74672600-74685600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:74673000-74685000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:74673000-74685600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr15:74673800-74680400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:74673800-74681000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:74673800-74681400	Enhancers	HMEC	breast
8	chr15:74674000-74682000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:74674400-74683000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:74674600-74680200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:74674600-74681200	Enhancers	Primary B cells from peripheral blood	blood
12	chr15:74674600-74686200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:74675000-74681400	Enhancers	Spleen	Spleen
14	chr15:74675800-74695800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr15:74676000-74680000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr15:74676000-74682400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:74676200-74681800	Enhancers	K562	blood
18	chr15:74676200-74685800	Enhancers	Primary hematopoietic stem cells	blood
19	chr15:74676400-74683000	Enhancers	Fetal Lung	lung
20	chr15:74676800-74681400	Enhancers	HSMM	muscle
21	chr15:74676800-74681800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:74677000-74680000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:74677000-74681800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr15:74677200-74682000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:74677400-74680800	Enhancers	NHEK	skin
26	chr15:74677600-74680000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr15:74677600-74680000	Weak transcription	A549	lung
28	chr15:74677600-74681800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:74677600-74689000	Weak transcription	Primary T cells from cord blood	blood
30	chr15:74678000-74681000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:74678000-74681400	Enhancers	Primary B cells from cord blood	blood
32	chr15:74678000-74681600	Weak transcription	Gastric	stomach
33	chr15:74678000-74682800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr15:74678000-74683400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr15:74678200-74681000	Enhancers	GM12878-XiMat	blood
36	chr15:74678200-74683200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:74678400-74680000	Enhancers	Lung	lung
38	chr15:74678400-74681600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:74678600-74680200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr15:74678600-74683200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr15:74678800-74680400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:74678800-74680400	Weak transcription	Fetal Heart	heart
43	chr15:74678800-74680400	Weak transcription	HSMMtube	muscle
44	chr15:74678800-74680800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:74678800-74681200	Weak transcription	Fetal Intestine Large	intestine
46	chr15:74678800-74684000	Weak transcription	NHDF-Ad	bronchial
47	chr15:74679000-74681400	Weak transcription	Fetal Intestine Small	intestine
48	chr15:74679200-74682600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:74679200-74684600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:74679200-74684600	Weak transcription	Brain Anterior Caudate	brain

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