Variant report

Variant	rs72625885
Chromosome Location	chr3:23844680-23844681
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs72625882	1.00[ASN][1000 genomes]
rs72625883	1.00[ASN][1000 genomes]
rs72625884	1.00[ASN][1000 genomes]
rs72625886	1.00[ASN][1000 genomes]
rs72625887	1.00[ASN][1000 genomes]
rs72625888	0.93[ASN][1000 genomes]
rs72625890	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834637	chr3:23703928-23886144	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23840000-23847000	Weak transcription	Right Atrium	heart
2	chr3:23840200-23846800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:23840200-23846800	Weak transcription	GM12878-XiMat	blood
4	chr3:23843800-23846200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:23843800-23846600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:23843800-23846800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:23844400-23845600	Enhancers	Fetal Intestine Large	intestine
8	chr3:23844400-23846800	Enhancers	Fetal Intestine Small	intestine
9	chr3:23844400-23846800	Weak transcription	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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