The 2.0 version of rSNPBase

Variant report

Variant rs72625890
Chromosome Location chr3:23854501-23854502
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23849800-23855400 Weak transcription Hela-S3 cervix
2 chr3:23850000-23854600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
3 chr3:23850000-23856400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr3:23852000-23855000 Strong transcription Dnd41 blood
5 chr3:23852800-23859600 Weak transcription Gastric stomach
6 chr3:23853000-23854600 Enhancers Primary T killer naive cells fromperipheralblood blood
7 chr3:23853000-23854600 Enhancers Fetal Lung lung
8 chr3:23853000-23854800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
9 chr3:23853000-23856400 Weak transcription Fetal Muscle Trunk muscle
10 chr3:23853000-23856400 Weak transcription Psoas Muscle Psoas
11 chr3:23853000-23856600 Weak transcription Small Intestine intestine
12 chr3:23853000-23857000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr3:23853000-23857000 Weak transcription Brain Hippocampus Middle brain
14 chr3:23853000-23857000 Weak transcription NHLF lung
15 chr3:23853000-23857400 Weak transcription Colonic Mucosa Colon
16 chr3:23853000-23858000 Weak transcription Lung lung
17 chr3:23853000-23859000 Weak transcription Placenta Placenta
18 chr3:23853000-23860000 Weak transcription Pancreas Pancrea
19 chr3:23853000-23860800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr3:23853000-23861000 Weak transcription Brain Inferior Temporal Lobe brain
21 chr3:23853000-23861200 Weak transcription Left Ventricle heart
22 chr3:23853000-23861400 Weak transcription H9 Cell Line embryonic stem cell
23 chr3:23853000-23862400 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr3:23853000-23862600 Weak transcription Ovary ovary
25 chr3:23853000-23862800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr3:23853000-23865800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr3:23853000-23866200 Weak transcription Placenta Amnion Placenta Amnion
28 chr3:23853000-23867200 Weak transcription Aorta Aorta
29 chr3:23853000-23867800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr3:23853000-23867800 Weak transcription Primary T cells fromperipheralblood blood
31 chr3:23853000-23867800 Weak transcription Esophagus oesophagus
32 chr3:23853000-23867800 Weak transcription Fetal Brain Female brain
33 chr3:23853000-23867800 Weak transcription Right Atrium heart
34 chr3:23853000-23868000 Weak transcription NH-A brain
35 chr3:23853000-23868400 Weak transcription HSMMtube muscle
36 chr3:23853000-23876000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
37 chr3:23853000-23876000 Weak transcription Fetal Stomach stomach
38 chr3:23853000-23882000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
39 chr3:23853000-23887400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr3:23853200-23854600 Enhancers Colon Smooth Muscle Colon
41 chr3:23853200-23855000 Strong transcription Primary monocytes fromperipheralblood blood
42 chr3:23853200-23855000 Strong transcription HSMM muscle
43 chr3:23853200-23855200 Weak transcription Fetal Intestine Large intestine
44 chr3:23853200-23856600 Weak transcription Right Ventricle heart
45 chr3:23853200-23857000 Weak transcription Brain Substantia Nigra brain
46 chr3:23853200-23858400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr3:23853200-23859400 Weak transcription Muscle Satellite Cultured Cells --
48 chr3:23853200-23861000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr3:23853200-23861000 Weak transcription Brain Germinal Matrix brain
50 chr3:23853200-23861200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015