The 2.0 version of rSNPBase

Variant report

Variant rs72627009
Chromosome Location chr3:23878689-23878690
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23853000-23882000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr3:23853000-23887400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr3:23853200-23893200 Weak transcription Thymus Thymus
4 chr3:23853400-23885600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr3:23855000-23900200 Weak transcription HSMM muscle
6 chr3:23857600-23894000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr3:23857600-23900000 Weak transcription Fetal Muscle Trunk muscle
8 chr3:23862000-23881400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr3:23862000-23882000 Weak transcription Fetal Intestine Large intestine
10 chr3:23867000-23881400 Weak transcription HepG2 liver
11 chr3:23868000-23884800 Weak transcription NHDF-Ad bronchial
12 chr3:23868000-23897800 Weak transcription HUVEC blood vessel
13 chr3:23868200-23881800 Weak transcription H1 Cell Line embryonic stem cell
14 chr3:23868200-23883600 Weak transcription Left Ventricle heart
15 chr3:23868200-23893000 Weak transcription Fetal Thymus thymus
16 chr3:23868600-23881200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr3:23869600-23881400 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr3:23871000-23880200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr3:23871200-23883600 Weak transcription Ovary ovary
20 chr3:23871200-23899000 Weak transcription Pancreas Pancrea
21 chr3:23871400-23897400 Weak transcription Primary T cells from cord blood blood
22 chr3:23872000-23897400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr3:23872400-23881800 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr3:23872600-23886800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr3:23873000-23887800 Weak transcription Primary T regulatory cells fromperipheralblood blood
26 chr3:23873800-23881800 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr3:23873800-23893000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr3:23873800-23898000 Weak transcription NHEK skin
29 chr3:23874400-23879600 Weak transcription Fetal Intestine Small intestine
30 chr3:23874400-23882200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr3:23874400-23888000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr3:23875200-23880400 Enhancers Primary hematopoietic stem cells blood
33 chr3:23875400-23879400 Enhancers Primary B cells from cord blood blood
34 chr3:23875800-23878800 Enhancers Primary monocytes fromperipheralblood blood
35 chr3:23875800-23879600 Enhancers Primary B cells from peripheral blood blood
36 chr3:23876200-23880000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr3:23876200-23881400 Weak transcription iPS-15b Cell Line embryonic stem cell
38 chr3:23876200-23883600 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr3:23876600-23878800 Enhancers Fetal Stomach stomach
40 chr3:23876800-23879800 Enhancers Duodenum Smooth Muscle Duodenum
41 chr3:23876800-23882000 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr3:23876800-23906800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr3:23877000-23880600 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr3:23877000-23882000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
45 chr3:23877200-23878800 Enhancers Brain Hippocampus Middle brain
46 chr3:23877400-23879200 Enhancers Rectal Mucosa Donor 31 rectum
47 chr3:23877400-23879400 Enhancers Colon Smooth Muscle Colon
48 chr3:23877800-23878800 Enhancers Cortex derived primary cultured neurospheres brain
49 chr3:23877800-23878800 Enhancers Brain Cingulate Gyrus brain
50 chr3:23877800-23879000 Enhancers Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015