Variant report

Variant	rs72625891
Chromosome Location	chr3:23855968-23855969
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23854561..23857291-chr3:23885014..23887485,2	K562	blood:
2	chr3:23853713..23855687-chr3:23855712..23857598,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs3811714	0.90[ASN][1000 genomes]
rs72625892	0.90[ASN][1000 genomes]
rs72625893	0.90[ASN][1000 genomes]
rs72625894	0.90[ASN][1000 genomes]
rs72625895	0.90[ASN][1000 genomes]
rs72625897	0.90[ASN][1000 genomes]
rs72625898	0.90[ASN][1000 genomes]
rs72625899	0.90[ASN][1000 genomes]
rs72625900	0.90[ASN][1000 genomes]
rs72625901	0.90[ASN][1000 genomes]
rs72625902	0.90[ASN][1000 genomes]
rs72627003	0.90[ASN][1000 genomes]
rs72627004	0.90[ASN][1000 genomes]
rs72627005	0.90[ASN][1000 genomes]
rs72627006	0.90[ASN][1000 genomes]
rs72627007	0.90[ASN][1000 genomes]
rs72627008	0.90[ASN][1000 genomes]
rs72627009	0.90[ASN][1000 genomes]
rs72627010	0.90[ASN][1000 genomes]
rs72627011	0.90[ASN][1000 genomes]
rs72627012	0.90[ASN][1000 genomes]
rs72627013	0.90[ASN][1000 genomes]
rs72627014	0.90[ASN][1000 genomes]
rs72627015	0.90[ASN][1000 genomes]
rs72627016	0.90[ASN][1000 genomes]
rs72627017	0.90[ASN][1000 genomes]
rs72627018	0.90[ASN][1000 genomes]
rs72627019	0.90[ASN][1000 genomes]
rs72627020	0.90[ASN][1000 genomes]
rs72627021	0.90[ASN][1000 genomes]
rs72627022	0.90[ASN][1000 genomes]
rs72627023	0.87[ASN][1000 genomes]
rs9863123	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834637	chr3:23703928-23886144	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23850000-23856400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:23852800-23859600	Weak transcription	Gastric	stomach
3	chr3:23853000-23856400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:23853000-23856400	Weak transcription	Psoas Muscle	Psoas
5	chr3:23853000-23856600	Weak transcription	Small Intestine	intestine
6	chr3:23853000-23857000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:23853000-23857000	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:23853000-23857000	Weak transcription	NHLF	lung
9	chr3:23853000-23857400	Weak transcription	Colonic Mucosa	Colon
10	chr3:23853000-23858000	Weak transcription	Lung	lung
11	chr3:23853000-23859000	Weak transcription	Placenta	Placenta
12	chr3:23853000-23860000	Weak transcription	Pancreas	Pancrea
13	chr3:23853000-23860800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:23853000-23861000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:23853000-23861200	Weak transcription	Left Ventricle	heart
16	chr3:23853000-23861400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:23853000-23862400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:23853000-23862600	Weak transcription	Ovary	ovary
19	chr3:23853000-23862800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:23853000-23865800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:23853000-23866200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:23853000-23867200	Weak transcription	Aorta	Aorta
23	chr3:23853000-23867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:23853000-23867800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr3:23853000-23867800	Weak transcription	Esophagus	oesophagus
26	chr3:23853000-23867800	Weak transcription	Fetal Brain Female	brain
27	chr3:23853000-23867800	Weak transcription	Right Atrium	heart
28	chr3:23853000-23868000	Weak transcription	NH-A	brain
29	chr3:23853000-23868400	Weak transcription	HSMMtube	muscle
30	chr3:23853000-23876000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:23853000-23876000	Weak transcription	Fetal Stomach	stomach
32	chr3:23853000-23882000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:23853000-23887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:23853200-23856600	Weak transcription	Right Ventricle	heart
35	chr3:23853200-23857000	Weak transcription	Brain Substantia Nigra	brain
36	chr3:23853200-23858400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:23853200-23859400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr3:23853200-23861000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:23853200-23861000	Weak transcription	Brain Germinal Matrix	brain
40	chr3:23853200-23861200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:23853200-23861200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr3:23853200-23893200	Weak transcription	Thymus	Thymus
43	chr3:23853400-23856600	Weak transcription	HUVEC	blood vessel
44	chr3:23853400-23857000	Weak transcription	Brain Angular Gyrus	brain
45	chr3:23853400-23857000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr3:23853400-23857400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:23853400-23859600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:23853400-23864400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr3:23853400-23866000	Weak transcription	HMEC	breast
50	chr3:23853400-23867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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