The 2.0 version of rSNPBase

Variant report

Variant rs72627005
Chromosome Location chr3:23872639-23872640
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23853000-23876000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr3:23853000-23876000 Weak transcription Fetal Stomach stomach
3 chr3:23853000-23882000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr3:23853000-23887400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr3:23853200-23893200 Weak transcription Thymus Thymus
6 chr3:23853400-23885600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr3:23854400-23876800 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr3:23855000-23900200 Weak transcription HSMM muscle
9 chr3:23857600-23894000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr3:23857600-23900000 Weak transcription Fetal Muscle Trunk muscle
11 chr3:23862000-23876400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr3:23862000-23881400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr3:23862000-23882000 Weak transcription Fetal Intestine Large intestine
14 chr3:23863000-23877800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr3:23863000-23878000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr3:23863200-23874000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr3:23865600-23877800 Weak transcription Stomach Smooth Muscle stomach
18 chr3:23866400-23873400 Weak transcription Fetal Intestine Small intestine
19 chr3:23866800-23874000 Weak transcription Spleen Spleen
20 chr3:23866800-23878000 Weak transcription Liver Liver
21 chr3:23867000-23877400 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr3:23867000-23881400 Weak transcription HepG2 liver
23 chr3:23868000-23873200 Weak transcription Lung lung
24 chr3:23868000-23873600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr3:23868000-23875800 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr3:23868000-23877800 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr3:23868000-23884800 Weak transcription NHDF-Ad bronchial
28 chr3:23868000-23897800 Weak transcription HUVEC blood vessel
29 chr3:23868200-23872800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr3:23868200-23875200 Weak transcription Gastric stomach
31 chr3:23868200-23876800 Weak transcription Primary T cells fromperipheralblood blood
32 chr3:23868200-23878000 Weak transcription Right Ventricle heart
33 chr3:23868200-23878200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr3:23868200-23878200 Weak transcription Right Atrium heart
35 chr3:23868200-23878600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr3:23868200-23881800 Weak transcription H1 Cell Line embryonic stem cell
37 chr3:23868200-23883600 Weak transcription Left Ventricle heart
38 chr3:23868200-23893000 Weak transcription Fetal Thymus thymus
39 chr3:23868400-23877800 Weak transcription Brain Substantia Nigra brain
40 chr3:23868600-23875200 Weak transcription iPS-20b Cell Line embryonic stem cell
41 chr3:23868600-23881200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr3:23868800-23873400 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr3:23869200-23875600 Weak transcription iPS-18 Cell Line embryonic stem cell
44 chr3:23869600-23875800 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr3:23869600-23881400 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr3:23870000-23874200 Enhancers Primary B cells from peripheral blood blood
47 chr3:23871000-23873800 Flanking Active TSS GM12878-XiMat blood
48 chr3:23871000-23880200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr3:23871200-23883600 Weak transcription Ovary ovary
50 chr3:23871200-23899000 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015