Variant report

Variant	rs72630491
Chromosome Location	chr15:92560937-92560938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12441537	0.83[ASN][1000 genomes]
rs17695404	0.83[ASN][1000 genomes]
rs35986208	0.94[AFR][1000 genomes]
rs4984324	0.87[ASN][1000 genomes]
rs4984325	0.87[ASN][1000 genomes]
rs7165226	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7170965	0.81[ASN][1000 genomes]
rs7171137	0.84[ASN][1000 genomes]
rs7178031	0.84[ASN][1000 genomes]
rs72630490	0.82[ASN][1000 genomes]
rs72630492	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92550800-92562600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:92552800-92561800	Weak transcription	Psoas Muscle	Psoas
3	chr15:92554200-92566200	Enhancers	Right Atrium	heart
4	chr15:92555400-92564200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:92555600-92563200	Enhancers	Brain Cingulate Gyrus	brain
6	chr15:92555600-92563200	Enhancers	Brain Hippocampus Middle	brain
7	chr15:92555600-92564000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:92555600-92565600	Weak transcription	Gastric	stomach
9	chr15:92555600-92570600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:92555800-92564200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:92556000-92561400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:92556000-92564200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:92556800-92565000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:92556800-92565200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:92557000-92562800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:92557400-92561000	Enhancers	Fetal Heart	heart
18	chr15:92557600-92561000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:92557800-92567000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:92558000-92561600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr15:92558000-92562600	Enhancers	Spleen	Spleen
22	chr15:92558000-92571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:92558200-92561000	Weak transcription	Esophagus	oesophagus
24	chr15:92558200-92561000	Weak transcription	Lung	lung
25	chr15:92558400-92561000	Weak transcription	Ovary	ovary
26	chr15:92558400-92561800	Weak transcription	Brain Anterior Caudate	brain
27	chr15:92558600-92568600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:92559000-92561200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr15:92559000-92562600	Weak transcription	Aorta	Aorta
30	chr15:92559200-92561200	Weak transcription	Brain Angular Gyrus	brain
31	chr15:92559200-92562200	Weak transcription	Brain Substantia Nigra	brain
32	chr15:92559200-92564000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr15:92559400-92564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:92559800-92561000	Weak transcription	Right Ventricle	heart
35	chr15:92560600-92562200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr15:92560800-92563400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links