Variant report

Variant	rs7165226
Chromosome Location	chr15:92567446-92567447
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92567168..92568935-chr15:92570606..92572185,2	K562	blood:
2	chr15:92562839..92565166-chr15:92567346..92570436,4	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11074031	0.84[ASN][1000 genomes]
rs11074032	0.81[ASN][1000 genomes]
rs11074033	0.81[ASN][1000 genomes]
rs11854488	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12441537	0.83[CHB][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap]
rs12593834	0.82[CHD][hapmap];0.81[GIH][hapmap]
rs12915872	0.93[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17644254	0.81[GIH][hapmap]
rs35986208	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3896097	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs4984324	0.81[CHB][hapmap]
rs4984325	1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7170661	0.86[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs7171137	0.86[CHD][hapmap]
rs72630491	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72630492	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv984212	chr15:92562075-92570410	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7165226	CIB1	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92570600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:92558000-92571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:92558600-92568600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:92562000-92567800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:92562600-92570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:92562800-92569600	Enhancers	Fetal Heart	heart
8	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
9	chr15:92563800-92568200	Enhancers	Aorta	Aorta
10	chr15:92564600-92570000	Enhancers	Brain Hippocampus Middle	brain
11	chr15:92564600-92571400	Weak transcription	Small Intestine	intestine
12	chr15:92565200-92569200	Weak transcription	Spleen	Spleen
13	chr15:92565200-92571400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:92565200-92572000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:92565200-92573400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:92565400-92568200	Weak transcription	Ovary	ovary
17	chr15:92565400-92572400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr15:92566200-92570600	Weak transcription	Brain Angular Gyrus	brain
19	chr15:92566200-92570800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:92566400-92568000	Weak transcription	Left Ventricle	heart
22	chr15:92566400-92568600	Weak transcription	Lung	lung
23	chr15:92566600-92568200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:92566800-92567800	Enhancers	Adipose Nuclei	Adipose
25	chr15:92567000-92567800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:92567000-92569600	Enhancers	Brain Substantia Nigra	brain
27	chr15:92567200-92567600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr15:92567200-92567800	Enhancers	Brain Anterior Caudate	brain
29	chr15:92567200-92568600	Weak transcription	Right Ventricle	heart
30	chr15:92567200-92569800	Enhancers	Brain Cingulate Gyrus	brain
31	chr15:92567400-92568000	Weak transcription	Right Atrium	heart

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