Variant report

Variant	rs3896097
Chromosome Location	chr15:92573075-92573076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11074031	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11074032	0.96[ASN][1000 genomes]
rs11074033	0.96[ASN][1000 genomes]
rs11074034	0.85[ASN][1000 genomes]
rs11854488	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs12101725	0.93[ASN][1000 genomes]
rs12591167	0.90[ASN][1000 genomes]
rs12906289	0.95[YRI][hapmap]
rs12915872	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1400784	0.83[CEU][hapmap]
rs35986208	0.90[ASN][1000 genomes]
rs4984325	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7165226	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs7170661	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7171137	0.80[JPT][hapmap]
rs7178031	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72630492	0.85[ASN][1000 genomes]
rs7498017	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
3	chr15:92565200-92573400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:92569800-92576600	Weak transcription	Brain Anterior Caudate	brain
6	chr15:92570600-92574200	Enhancers	Adipose Nuclei	Adipose
7	chr15:92570600-92578000	Enhancers	Right Atrium	heart
8	chr15:92570800-92573800	Enhancers	Fetal Lung	lung
9	chr15:92570800-92573800	Enhancers	Left Ventricle	heart
10	chr15:92570800-92574000	Enhancers	Ovary	ovary
11	chr15:92571000-92574000	Weak transcription	Pancreas	Pancrea
12	chr15:92571000-92576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
14	chr15:92571200-92575400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr15:92571400-92573200	Weak transcription	Brain Substantia Nigra	brain
16	chr15:92571400-92573400	Enhancers	Fetal Muscle Leg	muscle
17	chr15:92571400-92574600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:92571600-92573200	Weak transcription	Lung	lung
19	chr15:92571600-92573600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:92571800-92574000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:92571800-92576600	Weak transcription	Aorta	Aorta
22	chr15:92572000-92573800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:92572200-92573200	Weak transcription	Brain Angular Gyrus	brain
24	chr15:92572200-92574200	Enhancers	Right Ventricle	heart
25	chr15:92572200-92581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:92572400-92573400	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr15:92572400-92573800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:92572400-92574000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:92572600-92573200	Enhancers	Fetal Muscle Trunk	muscle
30	chr15:92572600-92573400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr15:92572600-92574200	Enhancers	Stomach Smooth Muscle	stomach
32	chr15:92572800-92573200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:92572800-92573400	Enhancers	Fetal Intestine Large	intestine
34	chr15:92572800-92573600	Enhancers	Fetal Heart	heart
35	chr15:92572800-92576600	Weak transcription	Fetal Brain Male	brain
36	chr15:92573000-92573200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:92573000-92573200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr15:92573000-92573400	Enhancers	Spleen	Spleen
39	chr15:92573000-92573600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:92573000-92575000	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr15:92573000-92575200	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr15:92573000-92577200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr15:92573000-92578000	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links