Variant report

Variant	rs11854488
Chromosome Location	chr15:92572509-92572510
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11074031	0.97[ASN][1000 genomes]
rs11074032	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11074033	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11074034	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12101725	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12591167	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12915872	0.96[CEU][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35986208	0.88[ASN][1000 genomes]
rs3896097	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs4984325	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7165226	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7170661	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs7170965	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7171137	0.86[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7174192	0.80[ASN][1000 genomes]
rs72630492	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
3	chr15:92565200-92573400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:92567600-92573000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:92569200-92572600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:92569400-92573000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:92569800-92573000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:92569800-92576600	Weak transcription	Brain Anterior Caudate	brain
10	chr15:92570600-92572600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr15:92570600-92574200	Enhancers	Adipose Nuclei	Adipose
12	chr15:92570600-92578000	Enhancers	Right Atrium	heart
13	chr15:92570800-92573800	Enhancers	Fetal Lung	lung
14	chr15:92570800-92573800	Enhancers	Left Ventricle	heart
15	chr15:92570800-92574000	Enhancers	Ovary	ovary
16	chr15:92571000-92574000	Weak transcription	Pancreas	Pancrea
17	chr15:92571000-92576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
19	chr15:92571200-92572800	Enhancers	Fetal Brain Male	brain
20	chr15:92571200-92575400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:92571400-92572800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr15:92571400-92573200	Weak transcription	Brain Substantia Nigra	brain
23	chr15:92571400-92573400	Enhancers	Fetal Muscle Leg	muscle
24	chr15:92571400-92574600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr15:92571600-92573000	Weak transcription	Spleen	Spleen
26	chr15:92571600-92573200	Weak transcription	Lung	lung
27	chr15:92571600-92573600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:92571800-92572800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:92571800-92572800	Weak transcription	Fetal Intestine Large	intestine
30	chr15:92571800-92573000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:92571800-92574000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:92571800-92576600	Weak transcription	Aorta	Aorta
33	chr15:92572000-92572600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:92572000-92573800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:92572200-92573200	Weak transcription	Brain Angular Gyrus	brain
36	chr15:92572200-92574200	Enhancers	Right Ventricle	heart
37	chr15:92572200-92581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:92572400-92572600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr15:92572400-92572600	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr15:92572400-92572800	Weak transcription	Fetal Heart	heart
41	chr15:92572400-92572800	Enhancers	Fetal Stomach	stomach
42	chr15:92572400-92573000	Enhancers	Duodenum Mucosa	Duodenum
43	chr15:92572400-92573400	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr15:92572400-92573800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:92572400-92574000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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