Variant report
| Variant | rs72631234 |
|---|---|
| Chromosome Location | chr3:79988213-79988214 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:79985588..79988269-chr3:79997438..79999054,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11706877 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11711557 | 0.87[EUR][1000 genomes] |
| rs11714723 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11718292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11719555 | 0.87[EUR][1000 genomes] |
| rs13318604 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1483443 | 0.94[EUR][1000 genomes] |
| rs17382737 | 0.87[EUR][1000 genomes] |
| rs72631235 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72631237 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72631238 | 0.94[EUR][1000 genomes] |
| rs72631239 | 0.94[EUR][1000 genomes] |
| rs72631240 | 0.92[EUR][1000 genomes] |
| rs72631241 | 0.93[EUR][1000 genomes] |
| rs72631242 | 0.81[EUR][1000 genomes] |
| rs7624595 | 0.85[EUR][1000 genomes] |
| rs7624707 | 0.87[EUR][1000 genomes] |
| rs9840771 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9879408 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009391 | chr3:79604443-80035898 | Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv428088 | chr3:79934080-80112721 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:79987600-79988800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
