Variant report

Variant	rs9840771
Chromosome Location	chr3:79953421-79953422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11706877	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711557	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11714723	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718292	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11719555	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13318604	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483443	0.81[EUR][1000 genomes]
rs17382737	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72631234	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72631235	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72631237	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72631238	0.81[EUR][1000 genomes]
rs72631239	0.81[EUR][1000 genomes]
rs72631241	0.82[EUR][1000 genomes]
rs7624595	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7624707	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9879408	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv834748	chr3:79828668-79985688	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv3889	chr3:79929718-79974707	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79953000-79953600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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