Variant report

Variant	rs72635668
Chromosome Location	chr13:93923642-93923643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93879154..93880951-chr13:93922724..93924964,2	MCF-7	breast:
2	chr13:93923573..93927055-chr13:93936691..93939719,3	K562	blood:
3	chr13:93923447..93925982-chr13:93929463..93931087,2	K562	blood:
4	chr13:93919996..93921843-chr13:93922617..93924683,3	K562	blood:
5	chr13:93921762..93924263-chr13:93926871..93928948,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10507998	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16948616	0.83[EUR][1000 genomes]
rs17267544	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17267585	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2057525	0.83[ASN][1000 genomes]
rs4142602	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72635674	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516201	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516203	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9516204	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9516205	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9516208	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9523984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9523985	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9523992	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9523993	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9523995	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9523996	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524000	0.94[ASN][1000 genomes]
rs9524001	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9561296	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561300	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2751156	chr13:93912999-93988638	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93920400-93928800	Weak transcription	Right Atrium	heart
2	chr13:93921200-93931400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:93921400-93931400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:93922400-93924400	Enhancers	Fetal Intestine Large	intestine
5	chr13:93922800-93923800	Enhancers	Colon Smooth Muscle	Colon
6	chr13:93922800-93923800	Enhancers	Fetal Stomach	stomach
7	chr13:93923000-93923800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:93923000-93923800	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr13:93923000-93923800	Enhancers	Fetal Intestine Small	intestine
10	chr13:93923000-93923800	Enhancers	Fetal Kidney	kidney
11	chr13:93923000-93923800	Enhancers	Fetal Lung	lung
12	chr13:93923000-93924000	Active TSS	A549	lung
13	chr13:93923000-93924000	Flanking Active TSS	HepG2	liver
14	chr13:93923000-93924200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:93923200-93923800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr13:93923200-93923800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr13:93923200-93923800	Enhancers	Brain Anterior Caudate	brain
18	chr13:93923200-93923800	Enhancers	Ovary	ovary
19	chr13:93923200-93924200	Enhancers	Brain Germinal Matrix	brain
20	chr13:93923200-93924400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr13:93923200-93924800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr13:93923600-93924000	Weak transcription	Osteobl	bone
23	chr13:93923600-93924400	Enhancers	Liver	Liver
24	chr13:93923600-93924600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:93923600-93930600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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