Variant report

Variant	rs9516201
Chromosome Location	chr13:93922640-93922641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93921090..93923272-chr13:93941054..93943049,2	K562	blood:
2	chr13:93919996..93921843-chr13:93922617..93924683,3	K562	blood:
3	chr13:93921762..93924263-chr13:93926871..93928948,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10507998	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17267544	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17267585	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2057525	0.82[ASN][1000 genomes]
rs4142602	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72635668	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72635674	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9516203	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516204	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516205	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516208	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9523984	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9523985	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9523992	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9523993	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9523995	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9523996	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9524000	0.92[ASN][1000 genomes]
rs9524001	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9561296	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561297	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2751156	chr13:93912999-93988638	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93897200-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:93901400-93923400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:93903000-93922800	Weak transcription	Fetal Stomach	stomach
4	chr13:93903000-93923000	Weak transcription	Fetal Intestine Small	intestine
5	chr13:93915400-93923200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:93920400-93928800	Weak transcription	Right Atrium	heart
7	chr13:93921200-93923000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:93921200-93923000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr13:93921200-93923000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:93921200-93923200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:93921200-93923200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr13:93921200-93923200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr13:93921200-93931400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr13:93921400-93923200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr13:93921400-93931400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:93921600-93923200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:93921800-93922800	Weak transcription	A549	lung
18	chr13:93921800-93923200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:93922200-93923000	Enhancers	Liver	Liver
20	chr13:93922200-93923000	Enhancers	HepG2	liver
21	chr13:93922200-93923200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr13:93922400-93923200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr13:93922400-93923200	Weak transcription	Ovary	ovary
24	chr13:93922400-93924400	Enhancers	Fetal Intestine Large	intestine

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