Variant report

Variant	rs72643613
Chromosome Location	chr13:95803080-95803081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10508022	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1750993	0.84[ASN][1000 genomes]
rs1750996	0.86[ASN][1000 genomes]
rs4148501	0.80[EUR][1000 genomes]
rs4148514	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs56170137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57771832	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74105442	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900925	chr13:95790353-95808003	Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95727000-95812000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr13:95750400-95812400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr13:95750400-95815400	Weak transcription	Fetal Intestine Large	intestine
4	chr13:95752200-95823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr13:95756400-95828200	Weak transcription	HSMM	muscle
7	chr13:95757600-95814400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr13:95762200-95817200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:95762400-95811800	Weak transcription	K562	blood
10	chr13:95768200-95806600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:95768200-95819000	Weak transcription	Fetal Intestine Small	intestine
12	chr13:95774600-95815800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr13:95778800-95833400	Weak transcription	Spleen	Spleen
14	chr13:95782000-95828000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr13:95783400-95803800	Weak transcription	Fetal Lung	lung
16	chr13:95787800-95827200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr13:95789200-95812400	Weak transcription	Aorta	Aorta
18	chr13:95789200-95817600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr13:95790000-95806600	Weak transcription	NH-A	brain
20	chr13:95790200-95812000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr13:95791000-95821400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr13:95792200-95805800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:95792600-95804000	Weak transcription	Primary T cells from cord blood	blood
24	chr13:95792600-95809200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr13:95792600-95811800	Weak transcription	Lung	lung
26	chr13:95792600-95813400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr13:95792600-95817000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr13:95792800-95810400	Weak transcription	NHLF	lung
29	chr13:95792800-95815800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr13:95793200-95809600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr13:95794200-95811600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr13:95798600-95810400	Weak transcription	GM12878-XiMat	blood
33	chr13:95799200-95833400	Weak transcription	HSMMtube	muscle
34	chr13:95799600-95812400	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:95799800-95803200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr13:95800400-95811800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr13:95802000-95810000	Enhancers	Stomach Mucosa	stomach
38	chr13:95802000-95811600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr13:95802000-95811600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr13:95802200-95803600	Enhancers	HepG2	liver
41	chr13:95802400-95803400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr13:95802600-95803200	Enhancers	Osteobl	bone
43	chr13:95802600-95803600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:95802600-95808800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr13:95802800-95803200	Enhancers	A549	lung
46	chr13:95802800-95803600	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr13:95803000-95803200	Enhancers	NHDF-Ad	bronchial
48	chr13:95803000-95805200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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