Variant report

Variant	rs7264810
Chromosome Location	chr20:23673625-23673626
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13039215	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13040366	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34438831	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35274446	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35573416	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4331584	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4602282	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6515380	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6515381	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6515382	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66923821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7264999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7269105	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7270028	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7270964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7271100	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7272414	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73088989	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73104363	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8114437	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8115789	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8115868	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8115901	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8118801	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8119415	0.83[AFR][1000 genomes]
rs8120766	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8121100	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8121173	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8123755	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv458950	chr20:23642427-23721992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv585724	chr20:23642427-23721992	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3454907	chr20:23643949-23775044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3454909	chr20:23643949-23775044	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv458952	chr20:23644387-23775819	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv585725	chr20:23644387-23775819	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1056210	chr20:23645826-23697939	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3450213	chr20:23646333-23701687	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1057975	chr20:23647482-23702005	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv912821	chr20:23654318-23731412	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv965862	chr20:23654636-23757320	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv3330298	chr20:23671036-23732973	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2586815	chr20:23671155-23674559	Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
15	esv3454565	chr20:23671740-23674411	Enhancers Weak transcription Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv3454566	chr20:23671740-23674411	Enhancers Weak transcription Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1988855	chr20:23671796-23674383	Weak transcription Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23671200-23675000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr20:23671400-23674400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr20:23671400-23676000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr20:23672000-23674400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:23672000-23674600	Enhancers	NHDF-Ad	bronchial
6	chr20:23672000-23674800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:23672000-23675800	Enhancers	HUVEC	blood vessel
8	chr20:23672200-23675800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:23672400-23674400	Enhancers	NHLF	lung
10	chr20:23672400-23674400	Enhancers	Osteobl	bone
11	chr20:23672600-23675000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr20:23672800-23674200	Weak transcription	Placenta	Placenta
13	chr20:23673200-23674200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr20:23673200-23674400	Enhancers	Right Atrium	heart
15	chr20:23673200-23675000	Enhancers	Left Ventricle	heart
16	chr20:23673200-23676400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr20:23673400-23673800	Enhancers	Right Ventricle	heart
18	chr20:23673400-23674200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr20:23673400-23674400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr20:23673400-23674400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr20:23673400-23674400	Enhancers	Adipose Nuclei	Adipose
22	chr20:23673400-23674400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr20:23673400-23675800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr20:23673400-23676000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr20:23673600-23674200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr20:23673600-23674400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr20:23673600-23674400	Enhancers	Spleen	Spleen
28	chr20:23673600-23674400	Enhancers	NH-A	brain
29	chr20:23673600-23674800	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links