Variant report

Variant	rs7270028
Chromosome Location	chr20:23681073-23681074
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13039215	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13040366	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34438831	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35274446	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35573416	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4331584	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4602282	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6515380	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6515381	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6515382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66923821	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7264810	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7264999	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7269105	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7270964	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7271100	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7272414	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73088989	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73104363	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73902136	0.80[AFR][1000 genomes]
rs8114437	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8115789	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8115868	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8115901	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8118801	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8120766	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8121100	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8121173	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8123755	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv458950	chr20:23642427-23721992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv585724	chr20:23642427-23721992	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3454907	chr20:23643949-23775044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3454909	chr20:23643949-23775044	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv458952	chr20:23644387-23775819	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv585725	chr20:23644387-23775819	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1056210	chr20:23645826-23697939	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3450213	chr20:23646333-23701687	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1057975	chr20:23647482-23702005	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv912821	chr20:23654318-23731412	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv965862	chr20:23654636-23757320	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv3330298	chr20:23671036-23732973	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv3324763	chr20:23674755-23737044	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1059419	chr20:23675365-23750153	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv585726	chr20:23677829-23726957	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1060720	chr20:23677900-23731412	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1055248	chr20:23677900-23740341	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23675800-23681600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:23680000-23681800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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