Variant report
| Variant | rs72651220 |
|---|---|
| Chromosome Location | chr8:64860012-64860013 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-32K4.2.1-5 | chr8:64859791-64860606 | ucscGeneNc_uc003xvc_2 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs56288719 | 1.00[ASN][1000 genomes] |
| rs6989408 | 1.00[ASN][1000 genomes] |
| rs72649264 | 1.00[ASN][1000 genomes] |
| rs72649267 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72649293 | 1.00[ASN][1000 genomes] |
| rs72651204 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv890969 | chr8:64807144-65047353 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv3341537 | chr8:64833447-64862817 | Active TSS Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
