Variant report

Variant	rs72655576
Chromosome Location	chr8:60556826-60556827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10111592	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11774669	0.93[AFR][1000 genomes]
rs17252576	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17318561	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28537162	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4131318	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5008399	0.88[AMR][1000 genomes]
rs57605178	0.82[AFR][1000 genomes]
rs72655574	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72655575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72655579	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60553400-60557200	Enhancers	Fetal Brain Male	brain
2	chr8:60555800-60557000	Enhancers	Fetal Brain Female	brain
3	chr8:60555800-60557200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:60555800-60557200	Enhancers	Brain Germinal Matrix	brain
5	chr8:60556200-60557200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:60556400-60557000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:60556400-60557000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:60556400-60557000	Enhancers	Fetal Lung	lung
9	chr8:60556400-60557200	Active TSS	GM12878-XiMat	blood
10	chr8:60556600-60557000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:60556600-60557200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:60556800-60557000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:60556800-60557200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:60556800-60557200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr8:60556800-60557600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:60556800-60557800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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