Variant report

Variant	rs11774669
Chromosome Location	chr8:60571129-60571130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10111592	0.91[ASN][1000 genomes]
rs11784625	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17252576	0.82[ASN][1000 genomes]
rs17318561	0.91[ASN][1000 genomes]
rs28537162	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4131318	0.82[ASN][1000 genomes]
rs4237035	0.83[AFR][1000 genomes]
rs57605178	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72655574	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72655575	0.93[AFR][1000 genomes]
rs72655576	0.93[AFR][1000 genomes]
rs72655579	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72655591	0.82[AMR][1000 genomes]
rs7350109	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60569800-60572000	Enhancers	Primary T cells from cord blood	blood
2	chr8:60569800-60573800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr8:60570200-60573200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:60570600-60571200	Enhancers	Fetal Brain Female	brain
5	chr8:60570600-60571800	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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