Variant report

Variant	rs7350109
Chromosome Location	chr8:60591355-60591356
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60588955..60591731-chr8:60598413..60600788,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10090791	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10113297	0.89[EUR][1000 genomes]
rs11774669	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11782188	0.90[EUR][1000 genomes]
rs11782236	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11784625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541902	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12543532	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12546326	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1606072	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1949101	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1949102	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1949103	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2326445	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4237035	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4299991	0.88[EUR][1000 genomes]
rs4504625	0.88[EUR][1000 genomes]
rs57605178	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62504732	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6415584	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6415585	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6471806	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6471807	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6984776	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6999716	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7000966	0.80[EUR][1000 genomes]
rs7006844	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72655591	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72655592	0.80[EUR][1000 genomes]
rs7820347	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9643512	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7350109	LOC643763	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60583400-60591400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:60591000-60591400	Enhancers	Cortex derived primary cultured neurospheres	brain

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