Variant report

Variant	rs1949101
Chromosome Location	chr8:60654115-60654116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10087535	0.82[EUR][1000 genomes]
rs10090791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113297	0.97[EUR][1000 genomes]
rs11782188	0.95[EUR][1000 genomes]
rs11782236	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784625	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12541902	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12543532	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12546326	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1606072	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1949102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949103	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2326445	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4237035	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4299991	0.92[EUR][1000 genomes]
rs4504625	0.93[EUR][1000 genomes]
rs57605178	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62504732	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6415584	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6415585	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6471806	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6471807	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6984776	0.95[CEU][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6999716	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006844	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72655591	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7350109	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7820347	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9643512	0.94[CEU][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60651200-60655000	Weak transcription	Primary B cells from cord blood	blood

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