Variant report

Variant	rs72655591
Chromosome Location	chr8:60611239-60611240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60594445..60596869-chr8:60610407..60613088,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10090791	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10113297	0.92[EUR][1000 genomes]
rs11774669	0.82[AMR][1000 genomes]
rs11782188	0.93[EUR][1000 genomes]
rs11782236	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11784625	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12541902	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12543532	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12546326	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1606072	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1949101	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1949102	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1949103	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2326445	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4237035	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4299991	0.91[EUR][1000 genomes]
rs4504625	0.91[EUR][1000 genomes]
rs4541897	0.82[EUR][1000 genomes]
rs57605178	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62504732	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6415584	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6415585	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6471806	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6471807	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6984776	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6999716	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7000966	0.82[EUR][1000 genomes]
rs7006844	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72655592	0.82[EUR][1000 genomes]
rs7350109	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7820347	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9643512	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60609400-60611600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:60610800-60611800	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:60611000-60611400	Weak transcription	Rectal Smooth Muscle	rectum

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