Variant report

Variant	rs7000966
Chromosome Location	chr8:60606951-60606952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10087535	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10113297	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11782188	0.83[EUR][1000 genomes]
rs11784625	0.80[EUR][1000 genomes]
rs12541902	0.95[EUR][1000 genomes]
rs4237035	0.81[EUR][1000 genomes]
rs4299991	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4504625	0.82[EUR][1000 genomes]
rs4541897	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57605178	0.80[EUR][1000 genomes]
rs62504732	0.96[EUR][1000 genomes]
rs72655591	0.82[EUR][1000 genomes]
rs72655592	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7350109	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60606200-60607000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:60606200-60608400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:60606200-60608600	Enhancers	HSMMtube	muscle
4	chr8:60606200-60610000	Enhancers	Fetal Stomach	stomach
5	chr8:60606400-60607000	Enhancers	Osteobl	bone
6	chr8:60606400-60607400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:60606400-60607800	Enhancers	Rectal Smooth Muscle	rectum
8	chr8:60606400-60608800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:60606600-60607000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:60606600-60607800	Enhancers	Stomach Smooth Muscle	stomach
11	chr8:60606600-60608200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:60606600-60608400	Enhancers	NH-A	brain
13	chr8:60606600-60609000	Enhancers	Colon Smooth Muscle	Colon
14	chr8:60606600-60611000	Enhancers	Hela-S3	cervix
15	chr8:60606800-60608200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:60606800-60608200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:60606800-60608200	Enhancers	Fetal Heart	heart
18	chr8:60606800-60610800	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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