Variant report

Variant	rs4541897
Chromosome Location	chr8:60622669-60622670
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10087535	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10090791	0.81[EUR][1000 genomes]
rs10113297	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11782188	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11782236	0.81[EUR][1000 genomes]
rs12541902	0.96[EUR][1000 genomes]
rs4237035	0.83[EUR][1000 genomes]
rs4299991	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4504625	0.84[EUR][1000 genomes]
rs62504732	0.95[EUR][1000 genomes]
rs6999716	0.81[EUR][1000 genomes]
rs7000966	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72655591	0.82[EUR][1000 genomes]
rs72655592	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60621200-60623000	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr8:60621400-60626000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:60622200-60626000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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