Variant report

Variant	rs12541902
Chromosome Location	chr8:60623348-60623349
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10087535	0.95[EUR][1000 genomes]
rs10090791	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11782188	0.83[EUR][1000 genomes]
rs11782236	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11784625	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12543532	0.81[AMR][1000 genomes]
rs12546326	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1606072	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1949101	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1949102	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1949103	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2326445	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4237035	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4299991	0.80[EUR][1000 genomes]
rs4504625	0.81[EUR][1000 genomes]
rs4541897	0.96[EUR][1000 genomes]
rs57605178	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62504732	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6415584	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6415585	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6471806	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6471807	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6984776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6999716	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7000966	0.95[EUR][1000 genomes]
rs7006844	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72655591	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72655592	0.94[EUR][1000 genomes]
rs7350109	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7820347	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9643512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60621400-60626000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:60622200-60626000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links