Variant report

Variant	rs6984776
Chromosome Location	chr8:60670867-60670868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:100026306..100026939-chr8:60670573..60671075,2	NB4	blood:

Variant related genes	Relation type
ENSG00000078487	Chromatin interaction
ENSG00000146834	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10090791	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10113297	0.94[EUR][1000 genomes]
rs11782188	0.92[EUR][1000 genomes]
rs11782236	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11784625	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12541902	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12543532	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12546326	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949101	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1949102	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1949103	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2326445	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237035	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4299991	0.89[EUR][1000 genomes]
rs4504625	0.90[EUR][1000 genomes]
rs57605178	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62504732	0.84[AMR][1000 genomes]
rs6415584	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6471806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999716	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7006844	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72655591	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7350109	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7820347	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60668400-60672000	Weak transcription	Pancreas	Pancrea
2	chr8:60670800-60674400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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