Variant report

Variant	rs10113297
Chromosome Location	chr8:60654640-60654641
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10087535	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10090791	0.95[EUR][1000 genomes]
rs11782188	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11782236	0.95[EUR][1000 genomes]
rs11784625	0.89[EUR][1000 genomes]
rs12543532	0.86[EUR][1000 genomes]
rs12546326	0.94[EUR][1000 genomes]
rs1473033	0.89[ASN][1000 genomes]
rs1606072	0.94[EUR][1000 genomes]
rs16925189	0.89[ASN][1000 genomes]
rs16925205	0.91[ASN][1000 genomes]
rs16925211	0.89[ASN][1000 genomes]
rs1949101	0.97[EUR][1000 genomes]
rs1949102	0.97[EUR][1000 genomes]
rs1949103	0.95[EUR][1000 genomes]
rs2326445	0.94[EUR][1000 genomes]
rs4237035	0.94[EUR][1000 genomes]
rs4299991	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4504625	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4541897	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57605178	0.89[EUR][1000 genomes]
rs58415565	0.89[ASN][1000 genomes]
rs60161009	0.92[ASN][1000 genomes]
rs60471102	0.89[ASN][1000 genomes]
rs6415584	0.94[EUR][1000 genomes]
rs6415585	0.94[EUR][1000 genomes]
rs6471806	0.94[EUR][1000 genomes]
rs6471807	0.94[EUR][1000 genomes]
rs6984776	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs6999716	0.95[EUR][1000 genomes]
rs7000966	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7006844	0.94[EUR][1000 genomes]
rs72655591	0.92[EUR][1000 genomes]
rs72655592	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73249744	0.89[ASN][1000 genomes]
rs73249747	0.88[ASN][1000 genomes]
rs73249748	0.88[ASN][1000 genomes]
rs7350109	0.89[EUR][1000 genomes]
rs7820347	0.94[EUR][1000 genomes]
rs907209	0.89[ASN][1000 genomes]
rs907210	0.89[ASN][1000 genomes]
rs9643512	0.94[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10113297	LOC643763	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60651200-60655000	Weak transcription	Primary B cells from cord blood	blood

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