Variant report
| Variant | rs60471102 |
|---|---|
| Chromosome Location | chr8:60674503-60674504 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10113297 | 0.89[ASN][1000 genomes] |
| rs11782188 | 0.88[ASN][1000 genomes] |
| rs1473033 | 1.00[ASN][1000 genomes] |
| rs16925150 | 0.82[ASN][1000 genomes] |
| rs16925189 | 0.94[ASN][1000 genomes] |
| rs16925205 | 0.96[ASN][1000 genomes] |
| rs16925211 | 0.96[ASN][1000 genomes] |
| rs4299991 | 0.86[ASN][1000 genomes] |
| rs4738783 | 0.84[ASN][1000 genomes] |
| rs58415565 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59572343 | 0.82[ASN][1000 genomes] |
| rs60128317 | 0.80[ASN][1000 genomes] |
| rs60161009 | 0.97[ASN][1000 genomes] |
| rs60259845 | 0.82[ASN][1000 genomes] |
| rs61373903 | 0.82[ASN][1000 genomes] |
| rs7009572 | 0.84[ASN][1000 genomes] |
| rs73247877 | 0.84[ASN][1000 genomes] |
| rs73249744 | 0.96[ASN][1000 genomes] |
| rs73249747 | 0.95[ASN][1000 genomes] |
| rs73249748 | 0.95[ASN][1000 genomes] |
| rs73680665 | 0.82[ASN][1000 genomes] |
| rs7833284 | 0.84[ASN][1000 genomes] |
| rs7834153 | 0.84[ASN][1000 genomes] |
| rs7841860 | 0.82[ASN][1000 genomes] |
| rs7842025 | 0.82[ASN][1000 genomes] |
| rs7842035 | 0.82[ASN][1000 genomes] |
| rs907209 | 0.94[ASN][1000 genomes] |
| rs907210 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030564 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv539630 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv890942 | chr8:60639357-60686330 | Enhancers Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:60672200-60674600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr8:60674400-60675000 | Strong transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
