Variant report

Variant	rs59572343
Chromosome Location	chr8:60607612-60607613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10504297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12543325	1.00[EUR][1000 genomes]
rs12546911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12549759	1.00[EUR][1000 genomes]
rs12682289	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1473033	0.82[ASN][1000 genomes]
rs16925086	1.00[EUR][1000 genomes]
rs16925125	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16925150	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925189	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16925205	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16925211	0.82[ASN][1000 genomes]
rs4738783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57039053	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58415565	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60128317	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60161009	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60259845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60471102	0.82[ASN][1000 genomes]
rs61373903	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7017228	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7017533	0.83[EUR][1000 genomes]
rs73247828	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73247831	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73247877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73249744	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73249747	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73249748	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73680624	1.00[EUR][1000 genomes]
rs73680627	1.00[EUR][1000 genomes]
rs73680629	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680641	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73680665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7826590	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7833284	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7834153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7841860	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842025	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907209	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs907210	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60606200-60608400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:60606200-60608600	Enhancers	HSMMtube	muscle
3	chr8:60606200-60610000	Enhancers	Fetal Stomach	stomach
4	chr8:60606400-60607800	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:60606400-60608800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:60606600-60607800	Enhancers	Stomach Smooth Muscle	stomach
7	chr8:60606600-60608200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:60606600-60608400	Enhancers	NH-A	brain
9	chr8:60606600-60609000	Enhancers	Colon Smooth Muscle	Colon
10	chr8:60606600-60611000	Enhancers	Hela-S3	cervix
11	chr8:60606800-60608200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:60606800-60608200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:60606800-60608200	Enhancers	Fetal Heart	heart
14	chr8:60606800-60610800	Enhancers	NHDF-Ad	bronchial
15	chr8:60607000-60607800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr8:60607000-60608000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:60607000-60608000	Enhancers	NHEK	skin
18	chr8:60607000-60608000	Enhancers	NHLF	lung
19	chr8:60607000-60608600	Enhancers	Fetal Lung	lung
20	chr8:60607000-60608600	Enhancers	HMEC	breast
21	chr8:60607200-60608000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:60607200-60608000	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr8:60607200-60608400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:60607200-60609200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:60607400-60607800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr8:60607400-60607800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:60607400-60608600	Enhancers	Osteobl	bone
28	chr8:60607600-60607800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:60607600-60607800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:60607600-60608000	Enhancers	Brain Germinal Matrix	brain

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