Variant report

Variant	rs57039053
Chromosome Location	chr8:60570797-60570798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60569526..60571045-chr8:60571365..60573106,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10504297	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12541727	0.93[ASN][1000 genomes]
rs12543325	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12543836	0.91[ASN][1000 genomes]
rs12546911	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12549759	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12675414	0.93[ASN][1000 genomes]
rs12675873	0.93[ASN][1000 genomes]
rs12682289	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925057	0.93[ASN][1000 genomes]
rs16925086	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16925125	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925150	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925189	0.93[AMR][1000 genomes]
rs16925205	0.93[AMR][1000 genomes]
rs4737548	0.91[ASN][1000 genomes]
rs4737549	0.93[ASN][1000 genomes]
rs4738783	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57760637	0.93[ASN][1000 genomes]
rs58415565	0.83[EUR][1000 genomes]
rs59144101	0.93[ASN][1000 genomes]
rs59572343	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60128317	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60259845	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61373903	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7007604	0.87[ASN][1000 genomes]
rs7009572	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7017228	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7017533	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73247828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73247831	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73247877	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680605	0.91[ASN][1000 genomes]
rs73680606	0.88[ASN][1000 genomes]
rs73680620	0.93[ASN][1000 genomes]
rs73680623	0.93[ASN][1000 genomes]
rs73680624	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73680627	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73680629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73680641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73680644	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680665	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7820215	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826590	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833284	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841860	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842025	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842035	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs907209	0.93[AMR][1000 genomes]
rs907210	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60569800-60570800	Weak transcription	Fetal Brain Male	brain
2	chr8:60569800-60572000	Enhancers	Primary T cells from cord blood	blood
3	chr8:60569800-60573800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr8:60570200-60573200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:60570600-60570800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:60570600-60571200	Enhancers	Fetal Brain Female	brain
7	chr8:60570600-60571800	Weak transcription	Rectal Smooth Muscle	rectum

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