Variant report

Variant	rs12541727
Chromosome Location	chr8:60555506-60555507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12543325	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12543836	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12549759	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12675414	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675873	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925000	0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16925057	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925086	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4737548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738780	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57039053	0.93[ASN][1000 genomes]
rs57760637	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59144101	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017533	0.92[ASN][1000 genomes]
rs73680605	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73680606	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73680620	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680624	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73680627	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73680629	0.92[ASN][1000 genomes]
rs73680641	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60553400-60557200	Enhancers	Fetal Brain Male	brain
2	chr8:60554400-60556000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:60554600-60556000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:60554800-60555800	Weak transcription	Fetal Stomach	stomach
5	chr8:60555000-60555800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:60555400-60556200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:60555400-60556400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:60555400-60556400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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