Variant report

Variant	rs16925057
Chromosome Location	chr8:60543209-60543210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60536802..60538571-chr8:60542161..60544626,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12541727	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543325	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12543836	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12549759	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12675414	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675873	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925000	0.91[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16925086	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4737548	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737549	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738780	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57039053	0.93[ASN][1000 genomes]
rs57760637	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59144101	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017533	0.92[ASN][1000 genomes]
rs73680605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73680606	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73680620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680623	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680624	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73680627	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73680629	0.92[ASN][1000 genomes]
rs73680641	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60539800-60546800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:60541200-60545000	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:60541400-60545000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:60542000-60544400	Enhancers	Colon Smooth Muscle	Colon
5	chr8:60542400-60543400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:60542400-60544400	Enhancers	HUVEC	blood vessel
7	chr8:60542600-60543800	Enhancers	NHLF	lung
8	chr8:60542600-60545200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:60542600-60545800	Enhancers	Rectal Smooth Muscle	rectum
10	chr8:60542800-60543400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:60542800-60544000	Enhancers	Fetal Lung	lung
12	chr8:60542800-60544200	Enhancers	Hela-S3	cervix
13	chr8:60543000-60543400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:60543000-60543600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:60543000-60543600	Active TSS	Stomach Smooth Muscle	stomach
16	chr8:60543000-60545000	Enhancers	Osteobl	bone
17	chr8:60543200-60543400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:60543200-60543400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr8:60543200-60543800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr8:60543200-60543800	Enhancers	Fetal Stomach	stomach
21	chr8:60543200-60544000	Enhancers	Fetal Brain Male	brain
22	chr8:60543200-60544000	Flanking Active TSS	NHDF-Ad	bronchial
23	chr8:60543200-60544200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:60543200-60544600	Enhancers	NH-A	brain
25	chr8:60543200-60547600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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