Variant report

Variant	rs73680624
Chromosome Location	chr8:60556068-60556069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60555606..60557604-chr8:60636589..60639437,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10504297	1.00[EUR][1000 genomes]
rs12541727	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12543325	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543836	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12546911	1.00[EUR][1000 genomes]
rs12549759	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12674637	0.82[AMR][1000 genomes]
rs12675414	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12675873	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12682289	1.00[EUR][1000 genomes]
rs16925000	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16925057	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16925086	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16925125	1.00[EUR][1000 genomes]
rs16925150	1.00[EUR][1000 genomes]
rs4737548	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4737549	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4738780	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4738783	1.00[EUR][1000 genomes]
rs57039053	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57760637	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58415565	0.83[EUR][1000 genomes]
rs59144101	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59572343	1.00[EUR][1000 genomes]
rs60128317	1.00[EUR][1000 genomes]
rs60259845	1.00[EUR][1000 genomes]
rs61373903	1.00[EUR][1000 genomes]
rs7009572	1.00[EUR][1000 genomes]
rs7017228	1.00[EUR][1000 genomes]
rs7017533	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73247828	1.00[EUR][1000 genomes]
rs73247831	1.00[EUR][1000 genomes]
rs73247877	1.00[EUR][1000 genomes]
rs73680605	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73680606	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73680620	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73680623	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73680627	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73680629	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73680641	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73680644	1.00[EUR][1000 genomes]
rs73680665	1.00[EUR][1000 genomes]
rs7820215	1.00[EUR][1000 genomes]
rs7826590	1.00[EUR][1000 genomes]
rs7833284	1.00[EUR][1000 genomes]
rs7834153	1.00[EUR][1000 genomes]
rs7841860	1.00[EUR][1000 genomes]
rs7842025	1.00[EUR][1000 genomes]
rs7842035	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60553400-60557200	Enhancers	Fetal Brain Male	brain
2	chr8:60555400-60556200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:60555400-60556400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:60555400-60556400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:60555800-60556200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:60555800-60556800	Enhancers	Fetal Stomach	stomach
7	chr8:60555800-60557000	Enhancers	Fetal Brain Female	brain
8	chr8:60555800-60557200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:60555800-60557200	Enhancers	Brain Germinal Matrix	brain
10	chr8:60556000-60556200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:60556000-60556200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr8:60556000-60556200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr8:60556000-60556400	Enhancers	Stomach Smooth Muscle	stomach
14	chr8:60556000-60556400	Enhancers	GM12878-XiMat	blood
15	chr8:60556000-60556800	Enhancers	Primary hematopoietic stem cells	blood

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