Variant report

Variant	rs16925086
Chromosome Location	chr8:60565984-60565985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10504297	1.00[EUR][1000 genomes]
rs12541727	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12543325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12543836	0.94[ASN][1000 genomes]
rs12546911	1.00[EUR][1000 genomes]
rs12549759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675414	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12675873	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12682289	1.00[EUR][1000 genomes]
rs16925000	1.00[ASW][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16925057	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16925125	1.00[EUR][1000 genomes]
rs16925150	1.00[EUR][1000 genomes]
rs4737548	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4737549	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4738780	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4738783	1.00[EUR][1000 genomes]
rs57039053	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57760637	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs58415565	0.83[EUR][1000 genomes]
rs59144101	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs59572343	1.00[EUR][1000 genomes]
rs60128317	1.00[EUR][1000 genomes]
rs60259845	1.00[EUR][1000 genomes]
rs61373903	1.00[EUR][1000 genomes]
rs7007604	0.84[ASN][1000 genomes]
rs7009572	1.00[EUR][1000 genomes]
rs7017228	1.00[EUR][1000 genomes]
rs7017533	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73247828	1.00[EUR][1000 genomes]
rs73247831	1.00[EUR][1000 genomes]
rs73247877	1.00[EUR][1000 genomes]
rs73680605	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73680606	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73680620	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73680623	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73680624	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73680627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73680629	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73680641	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73680644	1.00[EUR][1000 genomes]
rs73680665	1.00[EUR][1000 genomes]
rs7820215	1.00[EUR][1000 genomes]
rs7826590	1.00[EUR][1000 genomes]
rs7833284	1.00[EUR][1000 genomes]
rs7834153	1.00[EUR][1000 genomes]
rs7841860	1.00[EUR][1000 genomes]
rs7842025	1.00[EUR][1000 genomes]
rs7842035	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3325703	chr8:60564123-60566421	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3338533	chr8:60564648-60566046	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60564400-60569800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:60565800-60566000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood

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