Variant report

Variant	rs61373903
Chromosome Location	chr8:60608188-60608189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10504297	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12543325	1.00[EUR][1000 genomes]
rs12546911	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12549759	1.00[EUR][1000 genomes]
rs12682289	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1473033	0.82[ASN][1000 genomes]
rs16925086	1.00[EUR][1000 genomes]
rs16925125	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16925150	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925189	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16925205	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16925211	0.82[ASN][1000 genomes]
rs4738783	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57039053	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58415565	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59572343	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60128317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60161009	0.84[ASN][1000 genomes]
rs60259845	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60471102	0.82[ASN][1000 genomes]
rs7009572	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7017228	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7017533	0.83[EUR][1000 genomes]
rs73247828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73247831	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73247877	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73249744	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73249747	0.80[ASN][1000 genomes]
rs73249748	0.80[ASN][1000 genomes]
rs73680624	1.00[EUR][1000 genomes]
rs73680627	1.00[EUR][1000 genomes]
rs73680629	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680641	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73680644	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73680665	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820215	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7826590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7833284	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7834153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7841860	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842035	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907209	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs907210	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60606200-60608400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:60606200-60608600	Enhancers	HSMMtube	muscle
3	chr8:60606200-60610000	Enhancers	Fetal Stomach	stomach
4	chr8:60606400-60608800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:60606600-60608200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:60606600-60608400	Enhancers	NH-A	brain
7	chr8:60606600-60609000	Enhancers	Colon Smooth Muscle	Colon
8	chr8:60606600-60611000	Enhancers	Hela-S3	cervix
9	chr8:60606800-60608200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:60606800-60608200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:60606800-60608200	Enhancers	Fetal Heart	heart
12	chr8:60606800-60610800	Enhancers	NHDF-Ad	bronchial
13	chr8:60607000-60608600	Enhancers	Fetal Lung	lung
14	chr8:60607000-60608600	Enhancers	HMEC	breast
15	chr8:60607200-60608400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:60607200-60609200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:60607400-60608600	Enhancers	Osteobl	bone
18	chr8:60607800-60608400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:60607800-60608400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:60607800-60608400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:60607800-60609400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr8:60607800-60610200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:60607800-60610400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:60608000-60609000	Weak transcription	NHEK	skin
25	chr8:60608000-60609000	Weak transcription	NHLF	lung

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