Variant report

Variant	rs58415565
Chromosome Location	chr8:60670664-60670665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:60670528-60670739	MCF10A-Er-Src	breast:	n/a	chr8:60670528-60670551 chr8:60670528-60670536
2	FOXA1	chr8:60670555-60670798	T-47D	breast:	n/a	n/a
3	GATA3	chr8:60670463-60670805	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:100026306..100026939-chr8:60670573..60671075,2	NB4	blood:

Variant related genes	Relation type
ENSG00000253413	TF binding region
ENSG00000146834	Chromatin interaction
ENSG00000078487	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10113297	0.89[ASN][1000 genomes]
rs10504297	0.83[EUR][1000 genomes]
rs11782188	0.88[ASN][1000 genomes]
rs12543325	0.83[EUR][1000 genomes]
rs12546911	0.83[EUR][1000 genomes]
rs12549759	0.83[EUR][1000 genomes]
rs12682289	0.83[EUR][1000 genomes]
rs1473033	1.00[ASN][1000 genomes]
rs16925086	0.83[EUR][1000 genomes]
rs16925125	0.83[EUR][1000 genomes]
rs16925150	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16925189	0.94[ASN][1000 genomes]
rs16925205	0.96[ASN][1000 genomes]
rs16925211	0.96[ASN][1000 genomes]
rs4299991	0.86[ASN][1000 genomes]
rs4738783	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57039053	0.83[EUR][1000 genomes]
rs59572343	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60128317	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60161009	0.97[ASN][1000 genomes]
rs60259845	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60471102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61373903	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7009572	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7017228	0.83[EUR][1000 genomes]
rs73247828	0.83[EUR][1000 genomes]
rs73247831	0.83[EUR][1000 genomes]
rs73247877	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73249744	0.96[ASN][1000 genomes]
rs73249747	0.95[ASN][1000 genomes]
rs73249748	0.95[ASN][1000 genomes]
rs73680624	0.83[EUR][1000 genomes]
rs73680627	0.83[EUR][1000 genomes]
rs73680629	0.83[EUR][1000 genomes]
rs73680641	0.83[EUR][1000 genomes]
rs73680644	0.83[EUR][1000 genomes]
rs73680665	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7820215	0.83[EUR][1000 genomes]
rs7826590	0.83[EUR][1000 genomes]
rs7833284	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7834153	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7841860	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7842025	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7842035	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs907209	0.94[ASN][1000 genomes]
rs907210	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60668400-60672000	Weak transcription	Pancreas	Pancrea
2	chr8:60670600-60670800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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