Variant report

Variant	rs73249747
Chromosome Location	chr8:60650860-60650861
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10087535	0.81[ASN][1000 genomes]
rs10113297	0.88[ASN][1000 genomes]
rs10504297	0.81[AMR][1000 genomes]
rs11782188	0.87[ASN][1000 genomes]
rs12546911	0.81[AMR][1000 genomes]
rs1473033	0.95[ASN][1000 genomes]
rs16925150	0.80[ASN][1000 genomes]
rs16925189	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16925205	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16925211	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4299991	0.84[ASN][1000 genomes]
rs4738783	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58415565	0.95[ASN][1000 genomes]
rs59572343	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60161009	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60259845	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60471102	0.95[ASN][1000 genomes]
rs61373903	0.80[ASN][1000 genomes]
rs7009572	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73247828	0.81[AMR][1000 genomes]
rs73247831	0.81[AMR][1000 genomes]
rs73247877	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73249744	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73249748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73680644	0.81[AMR][1000 genomes]
rs73680665	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7820215	0.81[AMR][1000 genomes]
rs7833284	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7834153	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7841860	0.80[ASN][1000 genomes]
rs7842025	0.80[ASN][1000 genomes]
rs7842035	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs907209	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs907210	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60649600-60651200	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links