Variant report

Variant	rs4299991
Chromosome Location	chr8:60641321-60641322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10087535	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10090791	0.94[EUR][1000 genomes]
rs10113297	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11782188	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11782236	0.94[EUR][1000 genomes]
rs11784625	0.88[EUR][1000 genomes]
rs12541902	0.80[EUR][1000 genomes]
rs12543532	0.82[EUR][1000 genomes]
rs12546326	0.89[EUR][1000 genomes]
rs1473033	0.86[ASN][1000 genomes]
rs1606072	0.89[EUR][1000 genomes]
rs16925189	0.88[ASN][1000 genomes]
rs16925205	0.90[ASN][1000 genomes]
rs16925211	0.86[ASN][1000 genomes]
rs1949101	0.92[EUR][1000 genomes]
rs1949102	0.92[EUR][1000 genomes]
rs1949103	0.91[EUR][1000 genomes]
rs2326445	0.89[EUR][1000 genomes]
rs4237035	0.92[EUR][1000 genomes]
rs4504625	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4541897	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57605178	0.88[EUR][1000 genomes]
rs58415565	0.86[ASN][1000 genomes]
rs60161009	0.89[ASN][1000 genomes]
rs60471102	0.86[ASN][1000 genomes]
rs6415584	0.89[EUR][1000 genomes]
rs6415585	0.89[EUR][1000 genomes]
rs6471806	0.89[EUR][1000 genomes]
rs6471807	0.89[EUR][1000 genomes]
rs6984776	0.89[EUR][1000 genomes]
rs6999716	0.94[EUR][1000 genomes]
rs7000966	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7006844	0.89[EUR][1000 genomes]
rs72655591	0.91[EUR][1000 genomes]
rs72655592	0.83[EUR][1000 genomes]
rs73249744	0.86[ASN][1000 genomes]
rs73249747	0.84[ASN][1000 genomes]
rs73249748	0.84[ASN][1000 genomes]
rs7350109	0.88[EUR][1000 genomes]
rs7820347	0.89[EUR][1000 genomes]
rs907209	0.88[ASN][1000 genomes]
rs907210	0.88[ASN][1000 genomes]
rs9643512	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv890942	chr8:60639357-60686330	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3444104	chr8:60641231-60641682	Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3485512	chr8:60641239-60641541	Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3485513	chr8:60641250-60641609	Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3485510	chr8:60641256-60641537	Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3324168	chr8:60641263-60641640	Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3479312	chr8:60641280-60641519	Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3479313	chr8:60641280-60641519	Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3485514	chr8:60641311-60641494	Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3485511	chr8:60641318-60641620	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60640800-60642000	Enhancers	Primary B cells from peripheral blood	blood

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